For trimming adapters, see adapter sequences from TruSeq and Nextera libraries located in /usr/local/bin/Trimmomatic-0.39/adapters
For trimming adapters, see adapter sequences from TruSeq and Nextera libraries located in /usr/local/bin/Trimmomatic-0.39/adapters
Usage:
PE [-version] [-threads <threads>] [-phred33|-phred64] [-trimlog <trimLogFile>] [-summary <statsSummaryFile>] [-quiet] [-validatePairs] [-basein <inputBase> | <inputFile1> <inputFile2>] [-baseout <outputBase> | <outputFile1P> <outputFile1U> <outputFile2P> <outputFile2U>] <trimmer1>...
or:
SE [-version] [-threads <threads>] [-phred33|-phred64] [-trimlog <trimLogFile>] [-summary <statsSummaryFile>] [-quiet] <inputFile> <outputFile> <trimmer1>...
or:
-version