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Freebayes

usage: freebayes -f [REFERENCE] [OPTIONS] [BAM FILES] >[OUTPUT]

Bayesian haplotype-based polymorphism discovery.

parameters:

   -h --help       For a complete description of options.

freebayes is maintained by Erik Garrison and Pjotr Prins.

citation: Erik Garrison, Gabor Marth
          "Haplotype-based variant detection from short-read sequencing"
          arXiv:1207.3907 (http://arxiv.org/abs/1207.3907)

author:   Erik Garrison <erik.garrison@gmail.com>
version:  v1.3.6