| Time | Description | Topics covered | Video lectures | Comments |
|---|---|---|---|---|
9:00 - 9:30 | Grab some coffee and get settled in | None | ||
9:30 - 11:15 | Module 9 | Differential gene expression; only watch videos for parts 1, 2 and 3. | Start and finish the code in the Step 5 script | |
11:15 - 11:30 | Coffee/stretch break | |||
11:30 - 12:30 | Module 10 | Module identification; only watch videos for parts 1 and 2 | Start and finish the code in the Step 6 script | |
12:30 - 1:30 | Break for Lunch | |||
1:30 - 2:30 | Discussion and code review | Review step 5 and 6 scripts together, discuss DEG analysis, What to do if you don't have any DEGs...or too many? Q&A. | ||
2:15 - 3:15 | Module 11 | Functional enrichment analysis; videos for part 1 and 2 | Begin Step 7 script | |
3:15 - 3:30 | Coffee/stretch break | |||
3:30 - 4:30 | Module 11 | Functional enrichment analysis; videos for part 3 and 4 | Finish Step 7 script | |
4:30 - 6:00 | Discussion and wrap-up | Q&A, demo Rmarkdown report, highlight reproducibility topics (e.g. Code Ocean) |