Sourmash

== This is sourmash version 4.5.0. ==
== Please cite Brown and Irber (2016), doi:10.21105/joss.00027. ==

Create, compare, and manipulate k-mer sketches of biological sequences.

Usage instructions:
    Basic operations
        sourmash compare --help   create a similarity matrix comparing many samples
        sourmash compute --help   compute sequence signatures for inputs
        sourmash gather --help    search a metagenome signature against dbs
        sourmash index --help     index signatures for rapid search
        sourmash info --help      display sourmash version and other information
        sourmash plot --help      plot distance matrix made by 'compare'
        sourmash prefetch --help  search a signature against dbs, find all overlaps
        sourmash search --help    search a signature against other signatures

    Taxonomic operations
        sourmash lca --help

    Manipulate signature files
        sourmash sig --help
        sourmash signature --help

    Create signatures
        sourmash sketch --help

    Operations on storage
        sourmash storage --help

    Integrate taxonomy information based on "gather" results
        sourmash tax --help

Options:
  -h, --help     show this help message and exit
  -v, --version  show program's version number and exit
  -q, --quiet    don't print citation information