Downloading fastq files
- If necessary, authenticate your BaseSpace account by using the bs authenticate command and then going to the provided link and entering your BaseSpace login and password. This will add a config file to your home directory: ~/.basespace/default.cfg
bs authenticate
- Get the project ID using the bs list command.
bs list projects
- Download your fastq files using the bs download command.
bs download project -i 112983871 -o CHMI_FFPE_RUN1_fastqs
Downloading Runs
- Authenticate as in step #1 above.
- Get the run ID using the bs list command.
bs list runs
- Download your run using the bs download command.
sudo bs download run -i 290560439 -o 250214_A00901_1293_BH3MTCDSXF